Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs113430050 | chr22:42351054 | G/GACGC | 5.11E-5 | 406 | 16.3 | 17.08 | 9.62 | KM Plot |
| HNSC | rs113991601 | chr20:44419232 | T/C | 6.51E-7 | 411 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs11426515 | chr1:224635958 | A/AC | 1.18E-5 | 411 | 16.35 | 18.13 | 13.43 | KM Plot |
| HNSC | rs11464979 | chr1:213064612 | G/GT | 1.38E-5 | 410 | 16.15 | 20.2 | 5.03 | KM Plot |
| HNSC | rs114710018 | chr7:76218715 | T/A | 1.11E-10 | 410 | 16.37 | 14.77 | 3.95 | KM Plot |
| HNSC | rs11548262 | chr12:120907271 | G/T | 2.42E-5 | 407 | 16.17 | 19.07 | 7.27 | KM Plot |
| HNSC | rs115715845 | chr20:44435554 | T/C | 5.56E-7 | 409 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs11586036 | chr1:38090942 | A/C | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs11588571 | chr1:38080065 | C/A | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs115965884 | chr22:24594662 | C/T | 8.8E-7 | 407 | 16.5 | 14.02 | 5.68 | KM Plot |
| HNSC | rs11608807 | chr12:120892708 | T/A | 2.56E-5 | 406 | 16.2 | 18.8 | 7.27 | KM Plot |
| HNSC | rs11609119 | chr12:120877821 | T/A | 3.03E-6 | 402 | 16.43 | 17.33 | 6.17 | KM Plot |
| HNSC | rs11614224 | chr12:120892236 | C/A | 2.35E-5 | 407 | 16.23 | 18.8 | 7.27 | KM Plot |
| HNSC | rs11615719 | chr12:120924343 | C/T | 8.2E-5 | 407 | 16.17 | 19.07 | 7.38 | KM Plot |
| HNSC | rs116567822 | chr20:44435553 | T/C | 5.56E-7 | 409 | 16.35 | 14.98 | 9.13 | KM Plot |